Features disabled in feature list but still they appear in cPanel

You need to check if any custom theme like rvskin in installed for that domain? if yes then the issue relates to RVSkin and not cpanel. You will need to contact RVskin support.

cPanel addon Installation : RVskin

Installation

http://www.rvskin.com/index.php?page=public/installation

Documentation
http://support.rvskin.com/Softaculous
Installation

http://www.softaculous.com/docs/Main_Page#Installation_and_Usage

Documentation

http://www.softaculous.com/docs/Main_Page